DNA Laboratory

The DNA Laboratory comprises three separate units, the Nuclear DNA Unit, the Mitochondrial DNA Unit and the CODIS (Combined DNA Index System) Unit which includes a CODIS Administrative Section and a CODIS Laboratory Section. Each is tasked with assisting law enforcement agencies throughout the State of New Jersey in solving crimes utilizing state of the art DNA technology.

For evidence submittal to the Forensic Serology Unit, see the Evidence Field Manual link on the OFS home page.

The Nuclear DNA Unit

The Nuclear DNA Unit receives physical evidence containing biological stains (blood, semen, or saliva) from crimes involving homicides, sexual assaults, kidnappings, aggravated assaults, and burglaries. The laboratory currently targets 15 specific regions found along the chromosomes known as short tandem repeats (STR). The stains are subsequently analyzed for DNA using a four-step process: extraction, quantitation, amplification and detection. The subsequent STR genetic profile that is produced from analyzing a piece of biological evidence can be directly compared to the genetic profile of a reference control sample from either a victim or suspect. From this comparison, a scientist can conclude whether a person is included or excluded as the source of the stain. Profiles from evidentiary items can also be uploaded to the CODIS database and searched against other unknown forensic profiles, convicted offender profiles and arrestee profiles – a powerful tool when a crime occurs and there are no leads to a possible suspect. When a forensic unknown profile matches the profile of a reference sample, a scientist performs a statistical evaluation to give weight to this match. Typically the chance of selecting a randomly chosen individual that matches a full genetic profile is less than 1 in a quadrillion. A quadrillion is 1 followed by 15 zeroes. In addition to writing reports, DNA scientists are often called to court to testify as to the results and conclusions of their analyses.


The Nuclear DNA Unit also has the capability to analyze biological evidence for Y-STR's. Y-STR analysis is specific to the Y chromosome, and targets only male DNA, invaluable when a mixture of female and male DNA is present (e.g., sexual assault cases). While this can be a very useful tool, the Y-STR profile and resulting statistics are not as discriminatory as those typically found in an autosomal match. This is due to the fact that all paternally related male individuals share the same Y-STR profile. An individual who does not match the Y-STR profile can be positively excluded as the source of the Y-STR profile. However, when a person matches the Y-STR profile he is included with a host of individuals that may have this same profile. Because Y-STR’s are passed on from father to son, all male paternal descendants are expected to share the same Y-STR profile. This characteristic is advantageous because sometimes the proper reference samples needed for nuclear DNA comparison are not available (e.g., missing persons or mass disasters). In these situations, any direct male paternal descendant may be used for comparison purposes.

The Mitochondrial DNA Unit

The Mitochondrial DNA Unit began analyzing biological samples for mitochondrial DNA (mtDNA) in the fall of 2005.  Typically, mtDNA analysis is utilized for those specimens where the quality and/or quantity of DNA are insufficient for nuclear DNA analysis. Mitochondrial DNA analysis is also utilized in missing persons/unidentified remains cases where maternal relatives are the only available reference source.

Advantages of mtDNA

Because of its structure, location, and high copy # within the cell, mtDNA is much more robust than nuclear DNA and is more likely to be found in old, degraded and environmentally damaged samples. Mitochondrial DNA is also more likely to be found in samples that contain very little nuclear DNA to begin with, such as hair shafts, bones and teeth.

Maternal Inheritance:
Because mtDNA is passed on from mother to child, all maternal relatives are expected to share the same mtDNA profile. This characteristic is advantageous because sometimes the proper reference samples needed for nuclear DNA comparison are not available (e.g., missing persons or mass disasters). In these situations, any maternal relative may be used for comparison purposes.


Suitability of mtDNA Analysis

Because nuclear DNA analysis is more discriminating than mtDNA analysis and has the potential for identifying the source of the DNA, nuclear DNA analysis is usually the preferred method of testing. However, when items of evidence contain little or no nuclear DNA, or proper reference samples aren’t available to compare to the evidence, mtDNA analysis becomes a powerful investigative tool. The results can provide an important link between victim, suspect, and /or crime scene and can also conclusively exclude an individual as being the source of a mtDNA profile.

The majority of cases in which mtDNA analysis is performed involve hair evidence where only the hair shaft is present. Mitochondrial DNA analysis is also justified for hair evidence where no tissue is present on the root. A hair examination needs to be performed prior to mtDNA analysis to determine that the hair is human, its suitability for comparison to known reference hairs, and its suitability for nuclear DNA analysis.

Mitochondrial DNA analysis in unidentified remains cases is appropriate only when a forensic anthropologist and/or forensic odontologist can verify bone or teeth specimens as of human origin. During the examination, the best specimens for DNA analysis will be selected.

Current available techniques cannot effectively distinguish between sources or relative quantities of mtDNA. Consequently, mtDNA is not appropriate for evidence containing possible mixed sources of DNA such as semen stains from sexual assaults, fingernail scrapings, clothing, and “touch DNA” such as doorknobs, steering wheels, telephone receivers, etc.

In addition to criminal casework, this laboratory will process samples from missing person’s cases and subsequently upload the results into a missing person’s index within the CODIS database. This will assist law enforcement agencies in bringing closure to families missing loved ones.

The CODIS Unit

CODIS is an acronym for the Combined DNA Index System. This is a database containing forensic unknown, convicted offender, arrestee and unidentified human remains/missing persons DNA profile information.

At the New Jersey State Police Office of Forensic Sciences the CODIS Unit can be broken down into two distinct sections. The first section is responsible for entering the data into CODIS, tracking the matches and notifying the appropriate law enforcement agencies regarding the hits. The second section is the CODIS laboratory, which is responsible for analyzing the DNA samples collected from convicted offenders who have qualifying criminal offenses and arrestees who have been arrested for qualifying criminal offenses in the State of New Jersey. The OFS CODIS Unit works in cooperation with the CODIS Compliance Unit of the Division of Criminal Justice.

In New Jersey, CODIS has three levels. The National DNA Index System (NDIS), the State DNA Index System (SDIS) and the Local DNA Index System (LDIS).  NDIS is managed by the FBI, SDIS is managed by the NJSP OFS DNA Laboratory CODIS Unit and LDIS is currently being managed by the Union County DNA Laboratory.  All of these agencies work cooperatively to track and manage the hits to the database.

The database contains various indices, however, the most commonly used indices are the offender index, the arrestee index and the forensic unknown index.

The offender index contains DNA profiles of individuals convicted of an offense covered by the law in New Jersey at the time of their conviction.  The arrestee index contains DNA profiles from individuals arrested for a qualifying offense.   At the present time, a sample and information card are obtained from a convicted individual or arrestee and sent to the CODIS unit. The sample is given a bar code and the information card is retained in the CODIS unit. The only identifying information on the sample is this bar code. The sample is analyzed to generate a DNA profile at fifteen STR loci. After a quality control check, this DNA profile will be entered into the SDIS database. A complete profile (at least13 STR loci) can be uploaded to the NDIS database.

The forensic unknown index contains DNA profiles generated from crime scene stains. This data is then entered into the SDIS database. A complete profile (at least 10 STR loci) will be uploaded to the NDIS database.

Forensic unknown DNA profiles are searched against the offender index, the arrestee index and the forensic unknown index weekly. Any matches (hits) are confirmed at the laboratory and the appropriate law enforcement agencies are notified of this investigative lead. At this time the agencies are instructed to obtain a reference sample from the offender for comparison purposes.

CODIS Laboratory

Currently the State of New Jersey collects approximately 20,000 samples (convicted offenders and arrestees) each year. The CODIS laboratory is tasked with analyzing these samples for upload into the State (SDIS) and National (NDIS) databases. The laboratory employs state of the art technology to assist in the efficient and expeditious processing of the many hundreds of samples received each week into the CODIS unit.

Photograph of a scientist working in the CODIS Laboratory

Open Public Records Act
Divisional: NJSP Home | About Us | Recruiting | Division | Public Information | Services | News | FAQs | Contact Us
Departmental: OAG Home | Contact OAG | About OAG | OAG News | OAG FAQs
Statewide: NJ Home | Services A to Z | Departments/Agencies | FAQs

Copyright © State of New Jersey,
New Jersey State Police